7. Income Taxes

The Company did not record net income tax benefits for the operating losses incurred during the periods presented due to the uncertainty of realizing a tax benefit from those losses. Accordingly, any benefit recorded related to these deferred tax assets was offset by a valuation allowance reflecting management’s conclusion that realization of those assets was not more likely than not.

As further described in Note 2, “Summary of Significant Accounting Policies,” the Company has elected to prospectively adopt the guidance in ASU 2023-09. The following table is a reconciliation of the U.S. federal statutory rate of 21% to the Company’s effective income tax rate for the year ended December 31, 2025 in accordance with the guidance in ASU 2023-09:

 

 

Year Ended December 31,

 

In thousands, except percentages

 

2025

 

Provision for income taxes at U.S. federal statutory rate

 

 

(21.0

)%

 

$

(86,666

)

Tax credits:

 

 

 

 

 

 

   Research and development credits

 

 

(2.3

)

 

 

(9,547

)

   Orphan drug credits

 

 

(6.5

)

 

 

(26,678

)

Changes in valuation allowances

 

 

25.1

 

 

 

103,507

 

Non-taxable or non-deductible items:

 

 

 

 

 

 

   Stock-based compensation

 

 

4.5

 

 

 

18,718

 

   Other reconciling items

 

 

0.2

 

 

 

666

 

Total tax provision and effective tax rate

 

 

%

 

$

-

 

The following table is a reconciliation of the U.S. federal statutory rate of 21% to the Company’s effective rate for the years ended December 31, 2024 and 2023 in accordance with the guidance prior to the adoption of ASU 2023-09:

 

 

2024

 

2023

Federal statutory income tax rate

 

(21.0)%

 

(21.0)%

State income taxes

 

(7.9)

 

(8.6)

Research and development tax credits

 

(7.4)

 

(6.9)

Stock-based compensation

 

2.0

 

1.6

Non-deductible officers' compensation

 

0.1

 

-

Change in valuation allowance

 

34.2

34.9

Effective income tax rate

 

%

 

%

 

The Company’s net deferred tax assets (liabilities) consisted of the following:

 

 

December 31,

 

 

 

2025

 

 

2024

 

 

 

(in thousands)

 

Deferred tax assets:

 

 

 

 

 

 

Net operating loss carryforwards

 

$

457,009

 

 

$

296,766

 

Research and development credit carryforwards

 

 

243,725

 

 

 

200,816

 

Section 174 capitalized research

 

 

168,503

 

 

 

216,469

 

Operating lease liability

 

 

25,502

 

 

 

57,438

 

Deferred revenue

 

 

1,562

 

 

 

10,634

 

Stock-based compensation

 

 

26,036

 

 

 

34,827

 

Accruals and allowances

 

 

5,642

 

 

 

5,468

 

Prepaid rent

 

 

899

 

 

 

4,410

 

Equity investment adjustments

 

 

14,743

 

 

 

16,560

 

Intangibles, including in-process research and development

 

 

773

 

 

 

920

 

Capitalized start-up costs

 

 

167

 

 

 

211

 

Gross deferred tax assets

 

 

944,561

 

 

 

844,519

 

Deferred tax asset valuation allowance

 

 

(914,641

)

 

 

(783,211

)

Total deferred tax assets

 

 

29,920

 

 

 

61,308

 

Deferred tax liabilities:

 

 

 

 

 

 

Fixed assets

 

 

(968

)

 

 

(1,385

)

Operating lease right-of-use assets

 

 

(28,952

)

 

 

(59,923

)

Total deferred tax liabilities

 

 

(29,920

)

 

 

(61,308

)

Net deferred tax asset (liability)

 

$

-

 

 

$

-

 

During the year ended December 31, 2025, the Company paid no federal income taxes, net of refunds. Additionally, the amount paid in state income taxes, net of refunds received, was immaterial for the year ended December 31, 2025.

The Tax Cuts and Jobs Act (“TCJA”) requires taxpayers to capitalize and amortize, rather than deduct, research and development (“R&D”) expenditures under section 174 of the Internal Revenue Code of 1986, as amended (the “Code”) for tax years beginning after December 31, 2021. The Company will amortize these costs for tax purposes over 5 years if the R&D was performed in the U.S. and over 15 years if the R&D was performed outside the U.S. These rules became effective for the Company during the year ended December 31, 2022. The Company has capitalized foreign R&D costs of $34.1 million and $53.8 million for the tax years ended December 31, 2025 and December 31, 2024, respectively.

On July 4, 2025, the One Big Beautiful Bill Act (“OBBBA”) was enacted, providing taxpayers the option to fully deduct or continue capitalizing and amortizing domestic R&D expenditures under new Code Section 174A, effective for tax years beginning after December 31, 2024. The OBBBA also provides certain eligible taxpayers with the option to accelerate and deduct the remaining unamortized domestic R&D costs incurred during taxable years ending after December 31, 2021 and before January 1, 2025. The Company intends to continue amortizing domestic R&D costs incurred during taxable years ending after December 31, 2021 and before January 1, 2025. As of December 31, 2025, $517.2 million remains unamortized related to domestic R&D costs. Final elections will be made with the 2025 tax return filing.

As of December 31, 2025 and 2024, the Company had federal net operating loss carryforwards of $1,671.3 million and $1,088.4 million, respectively, which may be available to offset future income tax liabilities.

Approximately $36.9 million of the federal net operating losses generated prior to 2018 will begin to expire in 2034, unless previously utilized. Losses incurred prior to 2018 will generally be deductible to the extent of the lesser of a corporation’s net operating loss carryover or 100% of a corporation’s taxable income and be available for twenty years from the period the loss was generated. The federal net operating losses generated after 2017 of approximately $1,634.4 million will be carried over indefinitely, but the net operating loss deduction is generally limited to the lesser of the net operating loss carryforward or 80% of the Company’s taxable income (subject to Section 382 of the Code). Also, there will be no carryback for losses incurred after 2017.

As of December 31, 2025 and 2024, the Company also had state net operating loss carryforwards of $1,678.0 million and $1,079.2 million, respectively, which may be available to offset future income tax liabilities and begin to expire in 2034.

As of December 31, 2025 and 2024, the Company had federal tax credit carryforwards of approximately $175.5 million and $139.3 million, respectively, which begin to expire in 2034. As of December 31, 2025 and 2024, the Company had state research and development and other credit carryforwards of $86.4 million and $77.9 million, which begin to expire in 2029.

The Company evaluated the expected realizability of its net deferred tax assets and determined that there was significant negative evidence due to its net operating loss position and insufficient positive evidence to support the realizability of these net deferred tax assets. The Company concluded it is more likely than not that its net deferred tax assets would not be realized in the future; therefore, the Company has provided a full valuation allowance against its net deferred tax asset balance as of December 31, 2025 and 2024. The valuation allowance increased by $131.4 million in 2025, $167.1 million in 2024, and $161.3 million in 2023.

Ownership changes may limit the amount of net operating loss carryforwards or research and development tax credit carryforwards that can be utilized to offset future taxable income or tax liability. In general, an ownership change, as defined by Sections 382 and 383 of the Code, results from transactions increasing the ownership of certain shareholders or public groups in the stock of a corporation by more than 50% (by value) over a three-year period. If the Company has experienced a change of control, utilization of the net operating loss carryforwards or research and development tax credit carryforwards would be subject to an annual limitation under Sections 382 and 383 of the Code. Any limitation may result in expiration of a portion of the net operating loss carryforwards or research and development tax credit carryforwards before utilization. During 2022, the Company completed an assessment of the available net operating loss carryforwards and other tax attributes under Section 382. The analysis did not result in a material limitation to the Company’s tax attributes and the results of this analysis are reflected herein. The Company has not completed an analysis through December 31, 2025. To the extent there was a change in control during 2023 through 2025, the Company's tax attributes could be subject to limitation. However, a full valuation allowance has been provided against the deferred tax assets related to the Company’s net operating loss and tax credit carryforwards and, if an adjustment is required, this adjustment would be offset by an adjustment to the valuation allowance.

As of December 31, 2025, the Company had not identified any unrecognized tax benefits. The Company will recognize interest and/or penalties related to uncertain tax benefits in income tax expense if they arise.

The Company files income tax returns in the U.S. federal tax jurisdiction and Massachusetts and various other state tax jurisdictions. The Company is subject to examination by the Internal Revenue Service, Massachusetts taxing authorities and state taxing authorities for tax year 2022 through present. To the extent that the Company has tax attribute carryforwards, the tax year in which the attributes were generated may still be adjusted upon examination by the Internal Revenue Service or State taxing authorities to the extent utilized in a future period. The returns in these jurisdictions since inception remain open for examination.

Historical Timeline

Fiscal YearFiled
2025Feb 26, 2026Showing above
2024Feb 27, 2025
2023Feb 22, 2024
2022Feb 23, 2023
2021Feb 24, 2022
2020Feb 26, 2021
2019Feb 27, 2020
2018Feb 27, 2019
2017Mar 14, 2018
2016Mar 14, 2017

About Income Taxes Disclosures

The income tax disclosure reveals how much a company actually pays in taxes versus what the statutory rate would predict. Analysts focus on the effective tax rate (ETR) reconciliation, which breaks down every item driving the gap between the 21% federal rate and the company's reported ETR — including R&D credits, foreign rate differentials, and state taxes. Deferred tax assets (DTAs) and their valuation allowances signal management's confidence in future profitability: a rising allowance suggests the company doubts it can use accumulated tax benefits. Uncertain tax benefit (UTB) reserves quantify exposure to IRS challenges on aggressive positions.

Key signals to watch: sudden ETR drops without clear operational reasons, large increases in valuation allowances, growing UTB balances, and significant unremitted foreign earnings. Post-TCJA, pay attention to GILTI and BEAT provisions that affect multinational tax structures. Compare the cash taxes paid (from the cash flow statement) against the income tax provision to gauge earnings quality.